A legjelentősebb cikkek, amelyek szerzőinek többsége Karunkhoz tartozik

  • Drávai, B., & Reguly, I. Z. (2025). Performance and efficiency: A multi-generational benchmark of modern processors on bandwidth-bound HPC applications. Future Generation Computer Systems, 169, 107793.
  • Polcz, P., Reguly, I. Z., Tornai, K., Juhász, J., Pongor, S., Csikász-Nagy, A., & Szederkényi, G. (2025). Smart epidemic control: A hybrid model blending ODEs and agent-based simulations for optimal, real-world intervention planning. PLOS Computational Biology, 21(5), e1013028.
  • Németh, A., Bányai, G. L., Andrészek, M., Dobos, N. K., Köllőd, C., & Garay, T. (2025). Comparison of in vitro migration assays evaluating nintedanib’s migration inhibitory effects on melanoma cells. Scientific Reports, 15(1), 42599.
  • Kálovics, M., Szolgay, P., Ivan, K., & Szabó, Z. (2024). Microwave Resonance-Based Lab-on-a-Chip Local Pressure Sensing. IEEE Sensors Journal, 24(8), 12085-12093.
  • Gaizer, T., Juhász, J., Pillér, B., Szakadáti, H., Pongor, C. I., & Csikász-Nagy, A. (2024). Integrative analysis of yeast colony growth. Communications Biology, 7(1), 511.
  • Ligeti, B., Szepesi-Nagy, I., Bodnár, B., Ligeti-Nagy, N., & Juhász, J. (2024). ProkBERT family: genomic language models for microbiome applications. Frontiers in Microbiology, 14, 1331233.
  • Csikasz-Nagy, A., Ficho, E., Noto, S., & Reguly, I. (2024). Computational tools to predict context-specific protein complexes. Current Opinion in Structural Biology, 88, 102883.
  • Polcz, P., Tornai, K., Juhász, J., Cserey, G., Surján, G., Pándics, T., ... & Szederkényi, G. (2023). Wastewater-based modeling, reconstruction, and prediction for COVID-19 outbreaks in Hungary caused by highly immune evasive variants. Water Research, 241, 120098.
  • Zováthi, Ö., Pálffy, B., Jankó, Z., & Benedek, C. (2023). ST-DepthNet: A spatio-temporal deep network for depth completion using a single non-repetitive circular scanning Lidar. IEEE Robotics and Automation Letters, 8(6), 3270-3277.
  • Kalman, Z. E., Dudola, D., Mészáros, B., Gáspári, Z., & Dobson, L. (2022). PSINDB: the postsynaptic protein–protein interaction database. Database, 2022, baac007.
  • Jansson, E., Kovács, M., Lang, (2022) A. Surface Finite Element Approximation Of Spherical Whittle-Matérn Gaussian Random Fields SIAM JOURNAL ON SCIENTIFIC COMPUTING 44(2) pp . A825-A842 
  • Szabó, A. L., Sánta, A., Pancsa, R., & Gáspári, Z. (2022). Charged sequence motifs increase the propensity towards liquid–liquid phase separation. FEBS letters, 596(8), 1013-1028.
  • Judák, L., Chiovini, B., Juhász, G., Pálfi, D., Mezriczky, Z., Szadai, Z., ... & Rózsa, B. (2022). Sharp-wave ripple doublets induce complex dendritic spikes in parvalbumin interneurons in vivo. Nature communications, 13(1), 6715.
  • Reguly, I. Z., Csercsik, D., Juhász, J., Tornai, K., Bujtár, Z., Horváth, G., ... & Csikász-Nagy, A. (2022). Microsimulation based quantitative analysis of COVID-19 management strategies. PLoS computational biology, 18(1), e1009693.
  • Lunter, D., Klang, V., Kocsis, D., Varga‐Medveczky, Z., Berkó, S., & Erdő, F. (2022). Novel aspects of Raman spectroscopy in skin research. Experimental Dermatology, 31(9), 1311-1329.
  • Fedor, F. Z., Madarász, M., Zátonyi, A., Szabó, Á., Lőrincz, T., Danda, V., ... & Fekete, Z. (2022). Soft, Thiol‐ene/Acrylate‐based electrode array for long‐term recording of intracranial EEG signals with improved biocompatibility in mice. Advanced Materials Technologies, 7(5), 2100942.
  • Horváth, C., Tóth, L. F., Ulbert, I., & Fiáth, R. (2021). Dataset of cortical activity recorded with high spatial resolution from anesthetized rats. Scientific Data, 8(1), 180.
  • Péni, T., & Szederkényi, G. (2021). Convex output feedback model predictive control for mitigation of COVID-19 pandemic. Annual Reviews in Control, 52, 543-553.
  • Nagy, B., Kovács, L., & Benedek, C. (2021). ChangeGAN: A deep network for change detection in coarsely registered point clouds. IEEE Robotics and Automation Letters, 6(4), 8277-8284.
  • Ignácz, A., Földi, S., Sótonyi, P., Cserey, G. (2021) NB-SQI: A novel non-binary signal quality index for continuous blood pressure waveforms  BIOMEDICAL SIGNAL PROCESSING AND CONTROL 70 Paper: 103035 
  • Papp, Á., Porod, W., & Csaba, G. (2021). Nanoscale neural network using non-linear spin-wave interference. Nature communications, 12(1), 6422.

Karunk fő szerzőinek kiemelkedő publikációi

  • Judák, L., Dobos, G., Ócsai, K., Báthory, E., Szebik, H., Tarján, B., ... & Rózsa, B. (2025). Moculus: an immersive virtual reality system for mice incorporating stereo vision. Nature Methods, 22(2), 386-398.
  • Macaluso, F., Bos, T., Chiroli, E., Bonaiuti, P., Apuan, J. C., Gross, F., ... & Ciliberto, A. (2025). Evolutionary adaptation to hyperstable microtubules selectively targets tubulins and is empowered by the spindle assembly checkpoint. Cell Rep. 44: 115323.
  • Erdélyi, R., Csaba, G., Maucha, L., Kohl, F., Heinz, B., Greil, J., ... & Papp, Á. (2025). Design rules for low-insertion-loss magnonic transducers. Scientific Reports, 15(1), 9806.
  • Németh, A., Bányai, G. L., Dobos, N. K., Kós, T., Gaál, A., Varga, Z., ... & Garay, T. (2024). Extracellular vesicles promote migration despite BRAF inhibitor treatment in malignant melanoma cells. Cell Communication and Signaling, 22(1), 282.
  • Takács, V., Bardóczi, Z., Orosz, Á., Major, A., Tar, L., Berki, P., ... & Nyiri, G. (2024). Synaptic and dendritic architecture of different types of hippocampal somatostatin interneurons. PLoS biology, 22(3), e3002539.
  • Lunter, D., Klang, V., Eichner, A., Savic, S. M., Savic, S., Lian, G., & Erdő, F. (2024). Progress in topical and transdermal drug delivery research—focus on nanoformulations. Pharmaceutics, 16(6), 817.
  • Fabo, D., Bokodi, V., Szabó, J. P., Tóth, E., Salami, P., Keller, C. J., ... & Cash, S. S. (2023). The role of superficial and deep layers in the generation of high frequency oscillations and interictal epileptiform discharges in the human cortex. Scientific Reports, 13(1), 9620.
  • Pavani, M., Chiroli, E., Cancrini, C., Gross, F., Bonaiuti, P., Villa, S., ... & Ciliberto, A. (2023). Triap1 upregulation promotes escape from mitotic-slippage-induced G1 arrest. Cell Reports, 42(3).
  • Judák, L., Chiovini, B., Juhász, G., Pálfi, D., Mezriczky, Z., Szadai, Z., ... & Rózsa, B. (2022). Sharp-wave ripple doublets induce complex dendritic spikes in parvalbumin interneurons in vivo. Nature communications, 13(1), 6715.
  • Szabó, Á., Madarász, M., Lantos, Z., Zátonyi, A., Danda, V., Spurgin, L., ... & Fekete, Z. (2022). Transparent thiol‐ene/acrylate‐based microECoG devices used for concurrent recording of fluorescent calcium signals and electrophysiology in awake animals. Advanced Materials Interfaces, 9(25), 2200729.
  • Kocsis, B., Martínez-Bellver, S., Fiáth, R., Domonkos, A., Sviatkó, K., Schlingloff, D., ... & Hangya, B. (2022). Huygens synchronization of medial septal pacemaker neurons generates hippocampal theta oscillation. Cell reports, 40(5).
  • Szadai, Z., Pi, H. J., Chevy, Q., Ócsai, K., Albeanu, D. F., Chiovini, B., ... & Rózsa, B. (2022). Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. Elife, 11, e78815.
  • Ecker, A., Bagi, B., Vértes, E., Steinbach-Németh, O., Karlócai, M. R., Papp, O. I., ... & Káli, S. (2022). Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3. Elife, 11, e71850.
  • Hernansaiz-Ballesteros, R. D., Földi, C., Cardelli, L., Nagy, L. G., & Csikász-Nagy, A. (2021). Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints. Scientific reports, 11(1), 11122.
  • Sáray, S., Rössert, C. A., Appukuttan, S., Migliore, R., Vitale, P., Lupascu, C. A., ... & Káli, S. (2021). HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data. PLoS computational biology, 17(1), e1008114.
  • Fiáth, R., Meszéna, D., Somogyvári, Z., Boda, M., Barthó, P., Ruther, P., & Ulbert, I. (2021). Recording site placement on planar silicon-based probes affects signal quality in acute neuronal recordings. Scientific Reports, 11(1), 2028.

Karunk közreműködésével készült kiemelkedő cikkek

  • Gonzalez, K. C., Negrean, A., Liao, Z., Terada, S., Zhang, G., Lee, S., ... & Losonczy, A. (2025). Synaptic basis of feature selectivity in hippocampal neurons. Nature, 637(8048), 1152-1160.
  • Fekete, R., Simats, A., Bíró, E., Pósfai, B., Cserép, C., Schwarcz, A. D., ... & Dénes, Á. (2025). Microglia dysfunction, neurovascular inflammation and focal neuropathologies are linked to IL-1-and IL-6-related systemic inflammation in COVID-19. Nature Neuroscience, 28(3), 558-576.
  • Windolf, C., Yu, H., Paulk, A. C., Meszéna, D., Muñoz, W., Boussard, J., ... & Varol, E. (2025). DREDge: robust motion correction for high-density extracellular recordings across species. Nature methods, 22(4), 788-800.
  • Nanbakhsh, K., Shah Idil, A., Lamont, C., Dücső, C., Akgun, Ö. C., Horváth, D., ... & Giagka, V. (2025). On the longevity and inherent hermeticity of silicon-ICs: evaluation of bare-die and PDMS-coated ICs after accelerated aging and implantation studies. Nature Communications, 16(1), 12.
  • Torma, F., Kerepesi, C., Jokai, M., Babszki, G., Koltai, E., Ligeti, B., ... & Radák, Z. (2024). Alterations of the gut microbiome are associated with epigenetic age acceleration and physical fitness. Aging Cell, 23(4), e14101.
  • Munz, M., Bharioke, A., Kosche, G., Moreno-Juan, V., Brignall, A., Rodrigues, T. M., ... & Roska, B. (2023). Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex. Cell, 186(9), 1930-1949.
  • Király, B., Domonkos, A., Jelitai, M., Lopes-dos-Santos, V., Martínez-Bellver, S., Kocsis, B., ... & Hangya, B. (2023). The medial septum controls hippocampal supra-theta oscillations. Nature communications, 14(1), 6159.
  • Geiller, T., Sadeh, S., Rolotti, S. V., Blockus, H., Vancura, B., Negrean, A., ... & Losonczy, A. (2022). Local circuit amplification of spatial selectivity in the hippocampus. Nature, 601(7891), 105-109.